Remote RNA-Seq Workshop

July 27, 2020, 9 a.m. - July 31, 2020, 5 p.m.

Organizer -

Bioinformatics Core

Contact -

UC Davis Bioinformatics Core, training.bioinformatics@ucdavis.edu

Listed topics are preliminary and subject to change. For documentation from previous workshops, visit http://bioinformatics.ucdavis.edu/training/documentation/.

A preliminary agenda for the week includes:

Monday Introduction to the command line, cluster resources, and the R programming language (or advanced computing topics)
Tuesday Introduction to sequence data and preprocessing
Wednesday  Mapping data to a genome and transcript expression quantification
Thursday Differential expression analysis
Friday Post differential expression analysis, including gene set enrichment analysis, Gene Ontology/Pathway analysis, Generation of figures and tables
   

Lecture topics throughout the week will include: