Remote RNA-Seq Workshop
July 27, 2020, 9 a.m. - July 31, 2020, 5 p.m.
Organizer -
Bioinformatics Core
Contact -
UC Davis Bioinformatics Core, training.bioinformatics@ucdavis.edu
Listed topics are preliminary and subject to change. For documentation from previous workshops, visit http://bioinformatics.ucdavis.edu/training/documentation/.
A preliminary agenda for the week includes:
| Monday | Introduction to the command line, cluster resources, and the R programming language (or advanced computing topics) |
| Tuesday | Introduction to sequence data and preprocessing |
| Wednesday | Mapping data to a genome and transcript expression quantification |
| Thursday | Differential expression analysis |
| Friday | Post differential expression analysis, including gene set enrichment analysis, Gene Ontology/Pathway analysis, Generation of figures and tables |
Lecture topics throughout the week will include:
- What is Bioinformatics?
- Sequencing technologies
- Hardware and software considerations
- Experimental design and cost estimation
- TAG-Seq vs. mRNA-Seq
- Discussion of transcriptome assembly and functional annotation
- Discussion of Bacterial RNAseq
- Discussion of single cell RNAseq